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Scaffolding
0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
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#include <boost/graph/adjacency_list.hpp>#include <boost/graph/max_cardinality_matching.hpp>#include "utils/utils.hpp"#include "utils/graph_typedefs.hpp"#include "utils/graph_utils.hpp"Go to the source code of this file.
Functions | |
| template<class Graph > | |
| bool | scaffold::edge_on_alternating_cycle (const Vertex< Graph > &u, const Vertex< Graph > &v, const Graph &g, const Matching< Graph > &match) |
| return whether there is an alternating cycle in g containing the edge uv More... | |
tool to find alternating paths in a graph containing a perfect matching
1.8.10