scaffold::ScaffoldGraph Member List

This is the complete list of members for scaffold::ScaffoldGraph, including all inherited members.

_the_graph	scaffold::ScaffoldGraph	protected
add_edge(const Vertex &u, const Vertex &v, const EdgeProperty &ep=EdgeProperty(), const bool update_infos=true)	scaffold::ScaffoldGraph	inline
add_matching_edge(const Vertex &u, const Vertex &v, const EdgeProperty &ep=EdgeProperty(), const bool update_infos=true)	scaffold::ScaffoldGraph	inline
add_vertex(const VertexProperty &p, const bool update_infos=true)	scaffold::ScaffoldGraph	inline
add_vertex(const std::string name, const bool update_infos=true, const unsigned index=UINT_MAX)	scaffold::ScaffoldGraph	inline
add_vertex(const Vertex &u, const bool update_infos=true)	scaffold::ScaffoldGraph	inline
adjacent(const Vertex &u, const Vertex &v) const	scaffold::ScaffoldGraph	inline
clear_vertex(const Vertex &u)	scaffold::ScaffoldGraph	inline
copy_and_init_matching(const ScaffoldGraph &g, Matching< Graph > *const translate, const bool update_infos)	scaffold::ScaffoldGraph	inlineprotected
cVertexIndexMap typedef (defined in scaffold::ScaffoldGraph)	scaffold::ScaffoldGraph
degree(const Vertex &v) const	scaffold::ScaffoldGraph	inline
delete_edge(const Edge &e, const bool update_infos=true)	scaffold::ScaffoldGraph	inline
delete_edge(const Vertex &u, const Vertex &v)	scaffold::ScaffoldGraph	inline
delete_edge(const VertexPair< Graph > &uv)	scaffold::ScaffoldGraph	inline
delete_matching(const Vertex &u)	scaffold::ScaffoldGraph	inlineprotected
delete_vertex(const Vertex &u, const bool update_indices=true, const bool update_infos=true)	scaffold::ScaffoldGraph	inline
disjoint_union(const ScaffoldGraph &g)	scaffold::ScaffoldGraph	inline
Edge typedef (defined in scaffold::ScaffoldGraph)	scaffold::ScaffoldGraph
EdgeProperty typedef (defined in scaffold::ScaffoldGraph)	scaffold::ScaffoldGraph
find_edge(const Vertex &u, const Vertex &v) const	scaffold::ScaffoldGraph	inline
find_edge_by_name(const EdgeName &name) const	scaffold::ScaffoldGraph	inline
find_vertex_by_name(const VertexName &name) const	scaffold::ScaffoldGraph	inline
get_edge_name(const VertexPair< Graph > &uv) const	scaffold::ScaffoldGraph	inline
get_edge_name(const Edge &e) const	scaffold::ScaffoldGraph	inline
get_edges(const Predicate &pred=Predicate()) const	scaffold::ScaffoldGraph	inline
get_graph() const	scaffold::ScaffoldGraph	inline
get_graph_property() const	scaffold::ScaffoldGraph	inline
get_incident(const Vertex &u, const Predicate &pred=Predicate()) const	scaffold::ScaffoldGraph	inline
get_incident_non_matching(const Vertex &u) const	scaffold::ScaffoldGraph	inline
get_index_map() const	scaffold::ScaffoldGraph	inline
get_infos() const	scaffold::ScaffoldGraph	inline
get_matching() const	scaffold::ScaffoldGraph	inline
get_matching_edges() const	scaffold::ScaffoldGraph	inline
get_max_multiplicity() const	scaffold::ScaffoldGraph	inline
get_max_non_contig_length() const	scaffold::ScaffoldGraph	inline
get_neighbors(const Vertex &u, VertexSet &nh) const	scaffold::ScaffoldGraph	inline
get_non_matching_edges() const	scaffold::ScaffoldGraph	inline
Graph typedef (defined in scaffold::ScaffoldGraph)	scaffold::ScaffoldGraph
GraphProperty typedef (defined in scaffold::ScaffoldGraph)	scaffold::ScaffoldGraph
incident_matching_edge(const Vertex &v) const	scaffold::ScaffoldGraph	inline
infos	scaffold::ScaffoldGraph	protected
is_bridge(const ScafVertex &u, const ScafVertex &v)	scaffold::ScaffoldGraph	inline
is_bridge_const(const ScafVertex &u, const ScafVertex &v) const	scaffold::ScaffoldGraph	inline
is_matching_edge(const VertexPair< Graph > &uv) const	scaffold::ScaffoldGraph	inline
is_on_alternating_cycle(const ScafVertex &u, const ScafVertex &v) const	scaffold::ScaffoldGraph	inline
matched	scaffold::ScaffoldGraph	protected
matched_with(const Vertex &v) const	scaffold::ScaffoldGraph	inline
operator[](const Vertex &u) const	scaffold::ScaffoldGraph	inline
operator[](const Vertex &u)	scaffold::ScaffoldGraph	inline
operator[](const Edge &e) const	scaffold::ScaffoldGraph	inline
operator[](const Edge &e)	scaffold::ScaffoldGraph	inline
operator[](const VertexPair< Graph > &uv) const	scaffold::ScaffoldGraph	inline
operator[](const VertexPair< Graph > &uv)	scaffold::ScaffoldGraph	inline
parse_matching_from_graph()	scaffold::ScaffoldGraph	inlineprotected
print_statistics()	scaffold::ScaffoldGraph	inline
remove_contigs()	scaffold::ScaffoldGraph	inline
ScaffoldGraph()	scaffold::ScaffoldGraph	inline
ScaffoldGraph(const Graph &g)	scaffold::ScaffoldGraph	inline
ScaffoldGraph(Graph *const g)	scaffold::ScaffoldGraph	inline
ScaffoldGraph(const ScaffoldGraph &g, Matching< Graph > *const translate, const bool update_infos=true)	scaffold::ScaffoldGraph	inline
source(const Edge &e) const	scaffold::ScaffoldGraph	inline
split_off_component()	scaffold::ScaffoldGraph	inline
target(const Edge &e) const	scaffold::ScaffoldGraph	inline
update_vertex_indices(const unsigned first_index=0)	scaffold::ScaffoldGraph	inline
Vertex typedef (defined in scaffold::ScaffoldGraph)	scaffold::ScaffoldGraph
VertexIndexMap typedef (defined in scaffold::ScaffoldGraph)	scaffold::ScaffoldGraph
VertexProperty typedef (defined in scaffold::ScaffoldGraph)	scaffold::ScaffoldGraph
VertexSet typedef (defined in scaffold::ScaffoldGraph)	scaffold::ScaffoldGraph
weight() const	scaffold::ScaffoldGraph	inline
~ScaffoldGraph()	scaffold::ScaffoldGraph	inline