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Scaffolding
0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
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Public Types | |
| typedef contained_filter< VertexSet< Graph > > | V_Filter |
| typedef contained_filter< EdgeSet< Graph > > | E_Filter |
| typedef filtered_graph< Graph, E_Filter, V_Filter > | Subgraph |
Public Member Functions | |
| TD_Subgraph (const Graph &_super_g) | |
| void | introduce_vertex (const Vertex< Graph > &v) |
| void | forget_vertex (const Vertex< Subgraph > &u) |
| void | introduce_edge (const Edge< Graph > &e) |
| void | join (const TD_Subgraph< Graph > &h) |
Protected Attributes | |
| const Graph & | super_g |
| VertexSet< Graph > | introduced_vertices |
| VertexSet< Graph > | forgotten_vertices |
| EdgeSet< Graph > | introduced_edges |
| V_Filter | vertex_filter |
| E_Filter | edge_filter |
| Subgraph | g |
1.8.10