Scaffolding  0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
Classes | Public Member Functions | List of all members
scaffold::solv::ilp::LazyCyclesBlockCallback Class Reference
Inheritance diagram for scaffold::solv::ilp::LazyCyclesBlockCallback:

Public Member Functions

void build_auxgraph (const EdgeVarMap &var_map, AuxGraph &aux, TranslateMatrix &translate_layer)
 
void compute_startpoints (const TranslateMatrix &translate_layer, VertexSet< AuxGraph > &startpoints)
 
unsigned forbid_cycles_in_y ()
 
unsigned forbid_invalid_jumps ()
 
void main ()
 
IloCplex::CallbackI * duplicateCallback () const
 
 LazyCyclesBlockCallback (IloEnv env, const var_collection_multi &_vars, callback_statistics &_stats)
 
The documentation for this class was generated from the following file:
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