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Scaffolding
0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
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Public Types | |
| typedef PathsAndCycles | IndexType |
| typedef PCMinMatrix< Compare > | entries_t |
Public Member Functions | |
| TreeDPinfos (const size_t _max_paths) | |
| void | combine_with_child (const TreeDPinfos &child, const bool is_matching_edge, const EdgeName &uv, const size_t uv_weight) |
Public Attributes | |
| entries_t * | table |
| size_t | childs_done |
| const size_t | max_paths |
| bool | seen_matching |
| Compare | is_better |
Friends | |
| std::ostream & | operator<< (std::ostream &os, const TreeDPinfos &infos) |
1.8.10