Scaffolding  0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
Public Member Functions | Public Attributes | List of all members
scaffold::io::gviz_edge_writer_with_jumps Struct Reference
Inheritance diagram for scaffold::io::gviz_edge_writer_with_jumps:
scaffold::io::gviz_simple_edge_writer scaffold::io::gviz_property_writer< ScafEdge >

Public Member Functions

 gviz_edge_writer_with_jumps (const RawScaffoldGraph &_g, const std::list< contig_jump > &_jumps)
 
void write_properties (std::ostream &out, const ScafEdge &e) const
 
void operator() (std::ostream &out, const ScafEdge &e) const
 
- Public Member Functions inherited from scaffold::io::gviz_simple_edge_writer
void write_properties (std::ostream &out, const ScafEdge &e) const
 
void operator() (std::ostream &out, const ScafEdge &e) const
 
- Public Member Functions inherited from scaffold::io::gviz_property_writer< ScafEdge >
 gviz_property_writer (const RawScaffoldGraph &_g)
 
void write_property (std::ostream &out, const std::string &name, const std::string &value, const std::string &middle="") const
 
void write_property (std::ostream &out, const std::string &name, const unsigned &value, const std::string &middle="") const
 

Public Attributes

ScafEdgeSet jump_edges
 
- Public Attributes inherited from scaffold::io::gviz_property_writer< ScafEdge >
const RawScaffoldGraph & g
 
The documentation for this struct was generated from the following file:
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