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Scaffolding
0.1
This program can assemble genome scaffolds using the pairing information in paired-end reads.
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Public Attributes | |
| EdgeVarMap | times_used |
| EdgeVarMap | used_at_all |
| EdgeVarMap | contig_jumps |
Public Attributes inherited from scaffold::solv::ilp::var_collection_virt | |
| const Instance & | I |
| EdgeVarMap | times_used_undir |
| VertexVarMap | from_source |
| VertexVarMap | to_path_sink |
| VertexVarMap | to_cycle_sink |
Additional Inherited Members | |
Public Member Functions inherited from scaffold::solv::ilp::var_collection_virt | |
| var_collection_virt (const Instance &_I) | |
1.8.10